Changelog

Source: NEWS.md

AlphaMissenseR 1.0.0

• (v. 0.99.21) Update Zenodo data source to record 10813168, with more accessible ‘CC-BY-4.0’ license.
• (v. 0.99.16) Housekeeping
  • Order vignettes introduction, visualization, issues.
  • Use rjsoncons (>= 1.0.1), so that jsonlite is not a hard dependency.
  • Acknowledge additional funding sources; add ImmunoOncology biocViews term.
• (v. 0.99.15) Respond to Bioconductor reviewer comments
  • Use BiocBaseUtils for input assertions.
  • Include range join SQL directly rather than via a non-exported function.
  • Report file size when downloading.
  • Improve test coverage.
  • See GitHub issue comment; thanks @LiNk-NY
• (v. 0.99.11) Use an S4 class for alphamissense_connection, extending duckdb_connection.
• (v. 0.99.10) Introduce visualization on AlphaFold predictions.
• (v. 0.99.9) Update maintainer email address, add ‘Resource unavailable’ section to ‘Issues & Solutions’ vignette.
• (v. 0.99.7) Update to revised Zenodo API.
• (v. 0.99.5) BREAKING change. Requires duckdb >= 0.9.1, which cannot read DuckDB databases created with earlier versions. Also introduces changes to local cache naming. See the ‘Issues & Solutions’ vignette.
• (v. 0.99.4) Change back to Bioconductor ‘Software’ package, to allow for regular testing of data access code.
• (v. 0.99.1) Change to Bioconductor ‘Annotation’ package.
• (v. 0.99.1) Update to change in Zenodo API.

AlphaMissenseR 0.99.0

• (v. 0.0.18) Rename (including updating existing tables) ‘#CHROM’ to ‘CHROM’ in hg19 / hg38 tables
• (v. 0.0.17) Initial Bioconductor submission.