Package index

All functions

DMN-class

Class "DMN"

DMNGroup-class

Class "DMNGroup"

DirichletMultinomial-package

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

cvdmngroup()

Cross-validation on Dirichlet-Multinomial classifiers.

fit bestgrp xval

Data objects used for examples and the vignette

dmn()

Fit Dirichlet-Multinomial models to count data.

dmngroup()

Dirichlet-Multinomial generative classifiers.

mixture() mixturewt() goodnessOfFit() laplace() AIC(<DMN>) BIC(<DMN>) fitted(<DMN>) predict(<DMN>) fitted(<DMNGroup>) predict(<DMNGroup>) summary(<DMNGroup>)

Access model components.

heatmapdmn()

Heatmap representation of samples assigned to Dirichlet components.

roc()

Summarize receiver-operator characteristics

csubset()

Helpful utility functions