This document is located at https://mtmorgan.github.io/XM2023
This resource includes material presented at XM2023, the international conference of the Brazilian Association for Bioinformatics and Computational Biology, held in Curitiba Paraná, from 13 to 16 June 2023. Dr. Morgan presented a talk and two short courses. The talk addressed the contribution and future of Bioconductor.
Two short workshops illustrate use of R and Bioconductor in genomic analysis, emphasizing modern single-cell approaches. The first workshop introduces R, then explores essential data management tasks (for instance summarizing cell types and plotting a ‘UMAP’ in a single-cell RNASeq experiment) using the ‘tidy’ paradigm. No previous experience with R is required. The second workshop walks through a single-cell RNAseq analysis using R and Bioconductor packages. Users familiar with R will benefit most from this workshop, but users at all levels should be able to follow along.